You're losing a lot of torque multiplication by launching in second gear, rather than first. You have a 4.70 first gear ratio and a 2.99 second. You said you can launch at 2500 in second. What happens at 2500? Do you spin tires or does your torque converter stall? What RPM can you launch at in first, before tire spin is an issue? When you spin do you have any wheel hop?
Most guys running a 2015+ Ecoboost Mustang automatic, that are in the high 11s, are launching in first gear and running 1.60s in the 60 ft. Launching in second gear was worth a try, but it doesn't seem to be working for you. Your running 1.80s in the 60 ft. At this point, improving your launch and lowering your 60 ft time is probably the cheapest way to get in the 11s.
Most guys running a 2015+ Ecoboost Mustang automatic, that are in the high 11s, are launching in first gear and running 1.60s in the 60 ft. Launching in second gear was worth a try, but it doesn't seem to be working for you. Your running 1.80s in the 60 ft. At this point, improving your launch and lowering your 60 ft time is probably the cheapest way to get in the 11s.